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  5. Cpa|evm.model.tig00000553.10

Cpa|evm.model.tig00000553.10 (tig00000553_g2080.t1)


Aliases : tig00000553_g2080.t1

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component


Gene families : OG_01_0003314 (OrthoFinder) Phylogenetic Tree(s): OG0003314_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000553.10
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre03.g172950 30787716, CBF5 RNA processing.RNA modification.pseudouridylation.H/ACA... 0.15 OrthoFinder
Cz05g27150.t1 No alias tRNA pseudouridylate synthase B, C-terminal;... 0.08 OrthoFinder
Dusal.0050s00016.1 33193835 Pseudouridine synthase II, N-terminal; Dyskerin-like;... 0.06 OrthoFinder
EOD34035 No alias tRNA pseudouridylate synthase B, C-terminal;... 0.07 OrthoFinder
OT_02G00620.1 No alias Dyskerin-like; tRNA pseudouridylate synthase B,... 0.04 OrthoFinder
PTI_10G00920.1 No alias PUA domain; Pseudouridine synthase II, N-terminal; tRNA... 0.02 OrthoFinder
Sro31_g020400.1 Contig420.g5635 Centromere/microtubule-binding protein CBF5 0.05 OrthoFinder
TP06G01320.1 No alias tRNA pseudouridylate synthase B, C-terminal;... 0.08 OrthoFinder
Vocar.0015s0162.1 32899133 tRNA pseudouridylate synthase B, C-terminal;... 0.03 OrthoFinder
XM_002504184.1 MICPUN_107404, 107404 Hypothetical protein (CBF5) 0.04 OrthoFinder
lcl|BLLF01001744.1_cds_GFH21015.1_15492 HaLaN_18231, GFH21015 PUA domain-containing protein 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499136.1_8089 KAA8499136 Centromere/microtubule-binding protein CBF5 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012960 Dyskerin-like 43 100
IPR032819 TruB_C 221 287
IPR002501 PsdUridine_synth_N 104 220
IPR002478 PUA 291 364
No external refs found!