lcl|LHPG02000010.1_cds_PRW50958.1_993 (PRW50958)

Aliases : PRW50958

Description : DNA cross-link repair SNM1 isoform X1

Gene families : OG_01_0000568 (OrthoFinder) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000010.1_cds_PRW50958.1_993
Cluster	HCCA: Cluster_67

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g513254	30792686	DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana	0.03	OrthoFinder
Dusal.1214s00002.1	33200997	DNA repair metallo-beta-lactamase [Interproscan].	0.02	OrthoFinder
EOD24091	No alias	Metallo-beta-lactamase; DNA repair...	0.01	OrthoFinder
OT_11G00290.1	No alias	DNA repair metallo-beta-lactamase [Interproscan].	0.02	OrthoFinder
Transcript_contig_89459	89459	DNA repair metallo-beta-lactamase;...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000009	alpha-1,6-mannosyltransferase activity	IEA	Interproscan
MF	GO:0000030	mannosyltransferase activity	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004376	glycolipid mannosyltransferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006497	protein lipidation	None	Extended
BP	GO:0006505	GPI anchor metabolic process	None	Extended
BP	GO:0006506	GPI anchor biosynthetic process	IEA	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006643	membrane lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006650	glycerophospholipid metabolic process	None	Extended
BP	GO:0006661	phosphatidylinositol biosynthetic process	None	Extended
BP	GO:0006664	glycolipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009247	glycolipid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	None	Extended
MF	GO:0016758	hexosyltransferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045017	glycerolipid biosynthetic process	None	Extended
BP	GO:0046467	membrane lipid biosynthetic process	None	Extended
BP	GO:0046474	glycerophospholipid biosynthetic process	None	Extended
BP	GO:0046486	glycerolipid metabolic process	None	Extended
BP	GO:0046488	phosphatidylinositol metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903509	liposaccharide metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003684	damaged DNA binding	IEP	Enrichment
MF	GO:0004514	nicotinate-nucleotide diphosphorylase (carboxylating) activity	IEP	Enrichment
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006950	response to stress	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
BP	GO:0009435	NAD biosynthetic process	IEP	Enrichment
MF	GO:0016161	beta-amylase activity	IEP	Enrichment
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Enrichment
MF	GO:0016805	dipeptidase activity	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
MF	GO:0051287	NAD binding	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001279	Metallo-B-lactamas	453	611
IPR011084	DRMBL	655	752
IPR007315	PIG-V/Gpi18	59	315

External Links

No external refs found!

lcl|LHPG02000010.1_cds_PRW50958.1_993 (PRW50958)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation