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  5. lcl|LHPG02000010.1_cds_PRW50840.1_1043

lcl|LHPG02000010.1_cds_PRW50840.1_1043 (PRW50840)


Aliases : PRW50840

Description : Transcription elongation factor A 2-like


Gene families : OG_01_0000595 (OrthoFinder) Phylogenetic Tree(s): OG0000595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000010.1_cds_PRW50840.1_1043
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
TP10G02040.1 No alias Transcription elongation factor S-II, central domain;... 0.02 OrthoFinder
Vocar.0008s0299.1 32897261 Transcription elongation factor S-II, central domain;... 0.02 OrthoFinder
XM_003062110.1 MicpuC2_69959, 69959 Transcription elongation factor S-II, central domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
CC GO:0000124 SAGA complex IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003713 transcription coactivator activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009314 response to radiation IEP Enrichment
BP GO:0009411 response to UV IEP Enrichment
BP GO:0009416 response to light stimulus IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051254 positive regulation of RNA metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
CC GO:0070461 SAGA-type complex IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR017923 TFIIS_N 35 82
IPR001222 Znf_TFIIS 290 328
IPR003618 TFIIS_cen_dom 168 276
No external refs found!