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  5. lcl|LHPG02000009.1_cds_PRW56316.1_10006

lcl|LHPG02000009.1_cds_PRW56316.1_10006 (PRW56316)


Aliases : PRW56316

Description : AdoMet-dependent rRNA methyltransferase spb1


Gene families : OG_01_0001052 (OrthoFinder) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000009.1_cds_PRW56316.1_10006
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.16 tig00000217_g19151.t1 No description available 0.02 OrthoFinder
Cre03.g145907 30787606 RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder
Cre12.g529500 30792231 No description available 0.26 OrthoFinder
Cz10g22050.t1 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.2 OrthoFinder
EOD10706 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.04 OrthoFinder
OT_16G00640.1 No alias Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.19 OrthoFinder
PTI_07G00840.1 No alias Ribosomal RNA methyltransferase, Spb1, C-terminal;... 0.21 OrthoFinder
Sro945_g223150.1 Contig53.g396 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase 0.24 OrthoFinder
Transcript_contig_55971 55971 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.08 OrthoFinder
Transcript_contig_56474 56474 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.13 OrthoFinder
Vocar.0037s0081.1 32897572 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.03 OrthoFinder
XM_002508465.1 MICPUN_85499, 85499 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.14 OrthoFinder
XM_003057242.1 MicpuC2_14938, 14938 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.06 OrthoFinder
XM_003061074.1 MicpuC2_60535, 60535 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01004020.1_cds_GFH28754.1_23231 HaLaN_27296, GFH28754 2'-O-ribose RNA methyltransferase SPB1 homolog 0.04 OrthoFinder
lcl|BLLF01004020.1_cds_GFH28756.1_23233 HaLaN_27298, GFH28756 Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0032259 methylation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR024576 rRNA_MeTfrase_Spb1_DUF3381 238 407
IPR012920 rRNA_MeTfrase_Spb1_C 706 899
IPR002877 rRNA_MeTrfase_FtsJ_dom 24 200
No external refs found!