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  5. lcl|LHPG02000009.1_cds_PRW56130.1_10381

lcl|LHPG02000009.1_cds_PRW56130.1_10381 (PRW56130)


Aliases : PRW56130

Description : U5 small nuclear ribonucleo 200 kDa helicase-like


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000009.1_cds_PRW56130.1_10381
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000865.27 tig00000865_g5079.t1 DExH-box ATP-dependent RNA helicase DExH12... 0.06 OrthoFinder
Cpa|evm.model.tig00000865.28 tig00000865_g5079.t1 DExH-box ATP-dependent RNA helicase DExH12... 0.07 OrthoFinder
Cpa|evm.model.tig00000865.29 tig00000865_g5079.t1 DExH-box ATP-dependent RNA helicase DExH12... 0.01 OrthoFinder
Cre17.g744147 30781910 RNA processing.RNA splicing.spliceosome... 0.09 OrthoFinder
Cz03g23200.t1 No alias Brr2, N-terminal helicase PWI domain; Sec63 domain;... 0.09 OrthoFinder
Cz09g01060.t1 No alias Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.03 OrthoFinder
Dusal.0019s00002.1 33192520 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.06 OrthoFinder
Dusal.0467s00019.1 33194473 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.03 OrthoFinder
EOD12464 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.08 OrthoFinder
EOD14868 No alias Sec63 domain; Helicase, C-terminal; DEAD/DEAH box... 0.03 OrthoFinder
EOD17849 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
OT_08G02040.1 No alias Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.03 OrthoFinder
PTI_12G02760.1 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.02 OrthoFinder
Sro155_g070300.1 Contig395.g5337 DExH-box ATP-dependent RNA helicase DExH17 0.01 OrthoFinder
Sro610_g175200.1 No alias Putative U5 small nuclear ribonucleoprotein 200 kDa helicase 0.04 OrthoFinder
TP07G05150.1 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.02 OrthoFinder
Transcript_contig_54253 54253 Brr2, N-terminal helicase PWI domain; Helicase,... 0.02 OrthoFinder
Vocar.0001s0791.1 32884296 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.04 OrthoFinder
Vocar.0039s0093.1 32897827 Brr2, N-terminal helicase PWI domain; DEAD/DEAH box... 0.04 OrthoFinder
XM_002508192.1 MICPUN_84094, 84094 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.06 OrthoFinder
XM_002509189.1 MICPUN_98172, 98172 Helicase, C-terminal; Brr2, N-terminal helicase PWI... 0.08 OrthoFinder
XM_003061475.1 MicpuC2_48293, 48293 Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004096 catalase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004819 glutamine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR004179 Sec63-dom 991 1294
IPR041094 Brr2_helicase_PWI 265 372
IPR011545 DEAD/DEAH_box_helicase_dom 493 668
IPR004179 Sec63-dom 1826 2138
IPR011545 DEAD/DEAH_box_helicase_dom 1339 1508
IPR001650 Helicase_C 724 868
No external refs found!