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  5. lcl|LHPG02000008.1_cds_PRW56721.1_9631

lcl|LHPG02000008.1_cds_PRW56721.1_9631 (PRW56721)


Aliases : PRW56721

Description : E3 ubiquitin-ligase ORTHRUS 2-like


Gene families : OG_01_0004043 (OrthoFinder) Phylogenetic Tree(s): OG0004043_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: lcl|LHPG02000008.1_cds_PRW56721.1_9631
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001024.15 tig00001024_g6324.t1 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00020614.74 tig00020614_g12188.t1 No description available 0.02 OrthoFinder
Cre03.g163850 30788295 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz03g08240.t1 No alias SRA-YDG; Zinc finger, C3HC4 RING-type; RING-type... 0.02 OrthoFinder
Transcript_contig_53743 53743 RING-type zinc-finger, LisH dimerisation motif; SRA-YDG;... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR027370 Znf-RING_LisH 450 475
IPR018957 Znf_C3HC4_RING-type 81 120
IPR003105 SRA_YDG 209 359
No external refs found!