lcl|LHPG02000002.1_cds_PRW60614.1_4411 (PRW60614)


Aliases : PRW60614

Description : ATP-dependent helicase BRM


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000002.1_cds_PRW60614.1_4411
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.25 tig00000217_g19158.t1 Chromatin structure-remodeling complex protein SYD... 0.03 OrthoFinder
Cpa|evm.model.tig00000350.9 tig00000350_g24309.t1 CHD3-type chromatin-remodeling factor PICKLE... 0.01 OrthoFinder
Cpa|evm.model.tig00000863.2 tig00000863_g4959.t1 TATA-binding protein-associated factor BTAF1... 0.02 OrthoFinder
Cpa|evm.model.tig00020960.24 tig00020960_g16545.t1 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre02.g087600 30785983 Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre07.g325700 30774388 ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre08.g377200 30773522 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Cre09.g390000 30781417 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder
Cre12.g508150 30793288 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder
Cz01g25030.t1 No alias Helicase, C-terminal; Chromo domain; Domain of unknown... 0.02 OrthoFinder
Cz02g31160.t1 No alias Helicase, C-terminal; SLIDE domain; SNF2-related,... 0.02 OrthoFinder
Cz19g07040.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
Dusal.0035s00025.1 33196663 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Dusal.1946s00001.1 33193641 Helicase, C-terminal [Interproscan]. 0.03 OrthoFinder
EOD05386 No alias Chromo domain; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
EOD18155 No alias High mobility group box domain; ISWI, HAND domain;... 0.02 OrthoFinder
EOD23118 No alias SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD25651 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
EOD27153 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD36557 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD36957 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
OT_01G05670.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
OT_05G01620.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
OT_07G04020.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
OT_07G04400.1 No alias Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... 0.02 OrthoFinder
OT_12G02840.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
PTI_02G06230.1 No alias Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... 0.02 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.03 OrthoFinder
Sro386_g131880.1 Contig4061.g31129 Regulator of chromatin subfamily A containing DEAD/H box 1 0.03 OrthoFinder
Sro566_g167850.1 Contig3739.g28680 ISWI chromatin-remodeling complex ATPase ISW2 0.02 OrthoFinder
Sro847_g210300.1 Contig4605.g34375 CHD3-type chromatin-remodeling factor 0.02 OrthoFinder
Sro860_g212120.1 Contig2239.g18594 ISWI chromatin-remodeling complex ATPase ISW2 0.03 OrthoFinder
TP07G00550.1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.01 OrthoFinder
TP11G02170.1 No alias SNF2-related, N-terminal domain; Chromo domain;... 0.02 OrthoFinder
XM_002499830.1 MICPUN_56506, 56506 SNF2 super family 0.03 OrthoFinder
XM_002503134.1 MICPUN_59225, 59225 SNF2 super family 0.03 OrthoFinder
XM_002504726.1 MICPUN_62221, 62221 SNF2 super family 0.02 OrthoFinder
XM_002509111.1 MICPUN_62843, 62843 SNF2 super family 0.02 OrthoFinder
XM_003061151.1 MicpuC2_60694, 60694 SNF2 super family 0.02 OrthoFinder
lcl|BLLF01000141.1_cds_GFH08153.1_2630 HaLaN_03070, GFH08153 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13582.1_8059 HaLaN_09500, GFH13582 Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001410.1_cds_GFH19126.1_13603 HaLaN_16027, GFH19126 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
lcl|BLLF01003474.1_cds_GFH27437.1_21914 HaLaN_25757, GFH27437 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003728.1_cds_GFH28065.1_22542 HaLaN_26485, GFH28065 Helicase ATP-binding domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 KAA8498955 SWI/SNF chromatin-remodeling complex subunit snf22 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495718.1_1716 KAA8495718 Chromodomain-helicase-DNA-binding protein 2 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492942.1_2678 KAA8492942 TATA-binding protein-associated factor 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004359 glutaminase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006000 fructose metabolic process IEP Enrichment
BP GO:0006081 cellular aldehyde metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
BP GO:0042822 pyridoxal phosphate metabolic process IEP Enrichment
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0046184 aldehyde biosynthetic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 581 870
IPR001650 Helicase_C 889 1011
IPR000073 AB_hydrolase_1 1592 1775
No external refs found!