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  5. lcl|LHPG02000001.1_cds_PRW60935.1_747

lcl|LHPG02000001.1_cds_PRW60935.1_747 (PRW60935)


Aliases : PRW60935

Description : ATP-dependent zinc metalloprotease chloroplastic isoform B


Gene families : OG_01_0000075 (OrthoFinder) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000001.1_cds_PRW60935.1_747
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cre02.g078966 30784942 ATP-dependent zinc metalloprotease FTSH 7, chloroplastic... 0.03 OrthoFinder
Dusal.0491s00006.1 33192500 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 460 591
IPR000642 Peptidase_M41 687 873
No external refs found!