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  5. Cre17.g729250

Cre17.g729250 (30782291, UPF2)


Aliases : 30782291, UPF2

Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component


Gene families : OG_01_0002867 (OrthoFinder) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g729250
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022080.18 tig00022080_g23802.t1 Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz05g14090.t1 No alias Up-frameshift suppressor 2, C-terminal; MIF4G-like, type... 0.02 OrthoFinder
PTI_27G00580.1 No alias Up-frameshift suppressor 2, C-terminal; MIF4G-like, type... 0.02 OrthoFinder
Sro1269_g257860.1 Contig3033.g24207 Regulator of nonsense transcripts 0.02 OrthoFinder
Vocar.0004s0357.1 32889456 MIF4G-like, type 3; Up-frameshift suppressor 2,... 0.03 OrthoFinder
XM_003057592.1 MicpuC2_46957, 46957 Up-frameshift suppressor 2, C-terminal; MIF4G-like, type... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0004143 diacylglycerol kinase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
CC GO:0030173 integral component of Golgi membrane IEP Enrichment
CC GO:0031228 intrinsic component of Golgi membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007193 Upf2/Nmd2_C 1040 1199
IPR003890 MIF4G-like_typ-3 559 724
IPR003890 MIF4G-like_typ-3 758 950
No external refs found!