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  5. Cre16.g651000

Cre16.g651000 (30777595)


Aliases : 30777595

Description : Cell cycle.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.RPA1 component


Gene families : OG_01_0000974 (OrthoFinder) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g651000
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000823.18 tig00000823_g4546.t1 Replication protein A 70 kDa DNA-binding subunit E... 0.08 OrthoFinder
Cpa|evm.model.tig00000823.19 tig00000823_g4546.t1 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.04 OrthoFinder
Cz16g10020.t1 No alias Replication protein A, OB domain; Domain of unknown... 0.18 OrthoFinder
Dusal.0019s00033.1 33192542 Domain of unknown function DUF223; Replication factor-A... 0.08 OrthoFinder
Dusal.0019s00034.1 33192532 Replication factor A, C-terminal [Interproscan]. 0.07 OrthoFinder
EOD05089 No alias Replication factor-A protein 1, N-terminal; Replication... 0.05 OrthoFinder
EOD26024 No alias Replication factor-A protein 1, N-terminal; Replication... 0.02 OrthoFinder
EOD33894 No alias Replication factor A, C-terminal; Replication protein A,... 0.02 OrthoFinder
EOD40586 No alias Replication factor-A protein 1, N-terminal; Replication... 0.1 OrthoFinder
OT_15G01170.1 No alias Replication factor-A protein 1, N-terminal; Zinc finger,... 0.06 OrthoFinder
OT_18G01480.1 No alias Replication factor A, C-terminal; Replication protein A,... 0.07 OrthoFinder
PTI_15G03000.1 No alias Replication protein A, OB domain; Replication factor-A... 0.01 OrthoFinder
Sro773_g200410.1 Contig1379.g12684 Replication protein A 70 kDa DNA-binding subunit 0.05 OrthoFinder
Sro944_g222890.1 Contig4161.g31781 Replication protein A 70 kDa DNA-binding subunit 0.01 OrthoFinder
Transcript_contig_58809 58809 Replication factor-A protein 1, N-terminal; OB-fold... 0.01 OrthoFinder
Transcript_contig_79125 79125 Replication factor A, C-terminal [Interproscan]. 0.02 OrthoFinder
Vocar.0032s0065.1 32893746 Replication factor A, C-terminal; Domain of unknown... 0.09 OrthoFinder
XM_002501123.1 MICPUN_57417, 57417 Replication factor A, C-terminal; OB-fold nucleic acid... 0.06 OrthoFinder
XM_003064552.1 MicpuC2_54461, 54461 Replication protein A, OB domain; Replication factor A,... 0.03 OrthoFinder
lcl|BLLF01001291.1_cds_GFH18369.1_12846 HaLaN_15164, GFH18369 Hypothetical protein 0.08 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20700.1_5289 PRW20700 Replication A 70 kDa DNA-binding subunit B 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495307.1_1305 KAA8495307 Replication factor A protein 1 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007199 Rep_factor-A_N 7 99
IPR031657 REPA_OB_2 323 416
IPR013955 Rep_factor-A_C 494 638
No external refs found!