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  5. Cre12.g529600

Cre12.g529600 (30792110)


Aliases : 30792110

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1


Gene families : OG_01_0002297 (OrthoFinder) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g529600
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000203.25 tig00000203_g17130.t1 DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cz05g31150.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.23 OrthoFinder
Dusal.0073s00015.1 33194603 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.04 OrthoFinder
EOD22189 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.19 OrthoFinder
OT_14G01020.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.17 OrthoFinder
PTI_00G04260.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.15 OrthoFinder
Sro258_g101130.1 Contig315.g4199 DNA-directed RNA polymerase subunit beta' (Fragment) 0.13 OrthoFinder
TP06G00570.1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,... 0.08 OrthoFinder
Vocar.0037s0083.1 32897652 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.11 OrthoFinder
XM_002505754.1 MICPUN_65110, 65110 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.17 OrthoFinder
XM_003063796.1 MicpuC2_36623, 36623 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.1 OrthoFinder
lcl|BLLF01001934.1_cds_GFH21937.1_16414 HaLaN_19326, GFH21937 DNA-directed RNA polymerase subunit 0.04 OrthoFinder
lcl|BLLF01001934.1_cds_GFH21938.1_16415 HaLaN_19327, GFH21938 DNA-directed RNA polymerase subunit 0.07 OrthoFinder
lcl|BLLF01002728.1_cds_GFH25131.1_19608 HaLaN_23045, GFH25131 DNA-directed RNA polymerase subunit 0.08 OrthoFinder
lcl|BLLF01007679.1_cds_GFH33063.1_27540 HaLaN_32376, GFH33063 DNA-directed RNA polymerase subunit 0.02 OrthoFinder
lcl|LHPG02000006.1_cds_PRW58030.1_8585 PRW58030 DNA-directed RNA polymerase I complex large subunit Nuc1... 0.14 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8493983.1_3847 KAA8493983 DNA-directed RNA polymerase I subunit rpa1 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 1170 1850
IPR007066 RNA_pol_Rpb1_3 788 988
IPR000722 RNA_pol_asu 578 783
IPR007080 RNA_pol_Rpb1_1 12 234
IPR007083 RNA_pol_Rpb1_4 1088 1163
No external refs found!