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  5. Cre12.g529500

Cre12.g529500 (30792231)


Aliases : 30792231

No description available


Gene families : OG_01_0001052 (OrthoFinder) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g529500
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.16 tig00000217_g19151.t1 No description available 0.02 OrthoFinder
Cz10g22050.t1 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.28 OrthoFinder
EOD10706 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.04 OrthoFinder
OT_16G00640.1 No alias Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.17 OrthoFinder
PTI_01G11520.1 No alias Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.01 OrthoFinder
PTI_07G00840.1 No alias Ribosomal RNA methyltransferase, Spb1, C-terminal;... 0.27 OrthoFinder
Sro945_g223150.1 Contig53.g396 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase 0.3 OrthoFinder
Transcript_contig_55971 55971 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.11 OrthoFinder
Transcript_contig_56474 56474 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.12 OrthoFinder
Vocar.0037s0081.1 32897572 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.06 OrthoFinder
XM_002508465.1 MICPUN_85499, 85499 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.19 OrthoFinder
XM_003057242.1 MicpuC2_14938, 14938 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.08 OrthoFinder
XM_003061074.1 MicpuC2_60535, 60535 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01004020.1_cds_GFH28754.1_23231 HaLaN_27296, GFH28754 2'-O-ribose RNA methyltransferase SPB1 homolog 0.05 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56316.1_10006 PRW56316 AdoMet-dependent rRNA methyltransferase spb1 0.26 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494783.1_3313 KAA8494783 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0032259 methylation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR024576 rRNA_MeTfrase_Spb1_DUF3381 237 418
IPR002877 rRNA_MeTrfase_FtsJ_dom 23 199
IPR012920 rRNA_MeTfrase_Spb1_C 678 878
No external refs found!