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  5. Cre10.g438700

Cre10.g438700 (30790009)


Aliases : 30790009

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP12 assembly factor


Gene families : OG_01_0002276 (OrthoFinder) Phylogenetic Tree(s): OG0002276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g438700
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021721.26 tig00021721_g23228.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder
Cz06g14100.t1 No alias WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.11 OrthoFinder
Dusal.0249s00016.1 33195366 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.08 OrthoFinder
EOD19547 No alias WD40 repeat [Interproscan]. 0.11 OrthoFinder
OT_14G00820.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.2 OrthoFinder
PTI_02G04550.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Sro1810_g299130.1 Contig2202.g18320 WD repeat domain 3 0.24 OrthoFinder
TP06G03730.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Transcript_contig_56229 56229 Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.08 OrthoFinder
XM_002505442.1 MICPUN_65501, 65501 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.11 OrthoFinder
XM_003059717.1 MicpuC2_18664, 18664 Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.12 OrthoFinder
lcl|BLLF01000640.1_cds_GFH13684.1_8161 HaLaN_09618, GFH13684 WD_REPEATS_REGION domain-containing protein 0.03 OrthoFinder
lcl|BLLF01001813.1_cds_GFH21363.1_15840 HaLaN_18652, GFH21363 WD40 repeat [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59665.1_6392 PRW59665 WD repeat-containing 3 0.09 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497047.1_776 KAA8497047 U3 small nucleolar RNA-associated protein 12 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 836 937
IPR001680 WD40_repeat 427 459
IPR001680 WD40_repeat 646 683
IPR001680 WD40_repeat 512 541
IPR001680 WD40_repeat 74 99
IPR001680 WD40_repeat 148 183
IPR001680 WD40_repeat 689 724
IPR001680 WD40_repeat 189 223
IPR001680 WD40_repeat 104 141
IPR001680 WD40_repeat 607 640
No external refs found!