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  5. Cre10.g432000

Cre10.g432000 (30790662, DDB1)


Aliases : 30790662, DDB1

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DDB1 core adaptor component


Gene families : OG_01_0002784 (OrthoFinder) Phylogenetic Tree(s): OG0002784_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g432000
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000851.23 tig00000851_g4909.t1 DNA damage-binding protein 1 OS=Solanum lycopersicum 0.02 OrthoFinder
Cpa|evm.model.tig00000851.24 tig00000851_g4909.t1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder
Cz04g13190.t1 No alias Mono-functional DNA-alkylating methyl methanesulfonate... 0.02 OrthoFinder
Dusal.0512s00003.1 33192095 Mono-functional DNA-alkylating methyl methanesulfonate... 0.02 OrthoFinder
EOD21743 No alias Cleavage/polyadenylation specificity factor, A subunit,... 0.04 OrthoFinder
OT_10G03340.1 No alias Mono-functional DNA-alkylating methyl methanesulfonate... 0.02 OrthoFinder
PTI_17G01040.1 No alias Mono-functional DNA-alkylating methyl methanesulfonate... 0.03 OrthoFinder
Sro204_g085800.1 Contig1096.g10610 Damage-binding protein 1 0.03 OrthoFinder
Sro204_g085810.1 Contig1096.g10611 Damage-binding protein 1 0.01 OrthoFinder
Transcript_contig_54208 54208 Mono-functional DNA-alkylating methyl methanesulfonate... 0.01 OrthoFinder
XM_003055081.1 MicpuC2_50560, 50560 Mono-functional DNA-alkylating methyl methanesulfonate... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004143 diacylglycerol kinase activity IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
MF GO:0005375 copper ion transmembrane transporter activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 845 1207
No external refs found!