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  5. Cre10.g422000

Cre10.g422000 (30790663)


Aliases : 30790663

Description : RNA processing.RNA modification.rRNA/tRNA methylation.TRM1 tRNA guanosine-methyltransferase


Gene families : OG_01_0002502 (OrthoFinder) Phylogenetic Tree(s): OG0002502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g422000
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021168.21 tig00021168_g19088.t1 RNA processing.RNA modification.rRNA/tRNA... 0.13 OrthoFinder
Cz05g03070.t1 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.02 OrthoFinder
Dusal.0144s00018.1 33198197 tRNA methyltransferase, Trm1 [Interproscan]. 0.03 OrthoFinder
EOD10381 No alias Putative N2,N2-dimethylguanosine tRNA methyltransferase... 0.01 OrthoFinder
EOD31079 No alias Putative N2,N2-dimethylguanosine tRNA methyltransferase... 0.03 OrthoFinder
OT_09G03610.1 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.03 OrthoFinder
PTI_24G00880.1 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.04 OrthoFinder
Sro2_g001870.2 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_58377 58377 tRNA methyltransferase, Trm1 [Interproscan]. 0.02 OrthoFinder
Vocar.0019s0179.1 32892771 tRNA methyltransferase, Trm1 [Interproscan]. 0.05 OrthoFinder
XM_002506107.1 MICPUN_98316, 98316 tRNA methyltransferase, Trm1 [Interproscan]. 0.14 OrthoFinder
XM_003056694.1 MicpuC2_56104, 56104 tRNA methyltransferase, Trm1 [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01001104.1_cds_GFH17151.1_11628 HaLaN_13716, GFH17151 TRNA (guanine(26)-N(2))-dimethyltransferase 0.05 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58454.1_7789 PRW58454 TRNA (guanine(26)-N(2))-dimethyltransferase 2 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002905 Trm1 36 444
No external refs found!