Cre07.g322176 (30775305)

Aliases : 30775305

Description : DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana

Gene families : OG_01_0002242 (OrthoFinder) Phylogenetic Tree(s): OG0002242_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre07.g322176
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021348.37	tig00021348_g20540.t1	DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana	0.12	OrthoFinder
Cpa\|evm.model.tig00021348.38	tig00021348_g20541.t1	DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana	0.17	OrthoFinder
Cz01g18090.t1	No alias	RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2,...	0.19	OrthoFinder
Dusal.0023s00046.1	33198010	DNA-directed RNA polymerase, subunit 2, hybrid-binding...	0.05	OrthoFinder
EOD11590	No alias	DNA-directed RNA polymerase I subunit RPA2, domain 4;...	0.01	OrthoFinder
OT_02G02050.1	No alias	RNA polymerase Rpb2, domain 7; DNA-directed RNA...	0.05	OrthoFinder
Sro1898_g304130.1	Contig1148.g10962	Polymerase I subunit RPA2	0.13	OrthoFinder
TP12G01380.1	No alias	RNA polymerase Rpb2, domain 7; RNA polymerase, beta...	0.06	OrthoFinder
Transcript_contig_57824	57824	RNA polymerase Rpb2, domain 7; DNA-directed RNA...	0.11	OrthoFinder
Vocar.0003s0230.1	32889165	RNA polymerase Rpb2, domain 2; DNA-directed RNA...	0.06	OrthoFinder
XM_002507111.1	MICPUN_107316, 107316	Hypothetical protein (ACR2)	0.02	OrthoFinder
lcl\|BLLF01001006.1_cds_GFH16503.1_10980	HaLaN_12931, GFH16503	DNA-directed RNA polymerase subunit beta	0.02	OrthoFinder
lcl\|BLLF01001006.1_cds_GFH16505.1_10982	HaLaN_12933, GFH16505	DNA-directed RNA polymerase subunit beta	0.01	OrthoFinder
lcl\|BLLF01001679.1_cds_GFH20688.1_15165	HaLaN_17850, GFH20688	DNA-directed RNA polymerase subunit beta	0.06	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58691.1_8067	PRW58691	DNA-directed RNA polymerase I subunit	0.12	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Enrichment
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008170	N-methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016778	diphosphotransferase activity	IEP	Enrichment
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Enrichment
BP	GO:0030490	maturation of SSU-rRNA	IEP	Enrichment
CC	GO:0030684	preribosome	IEP	Enrichment
CC	GO:0032040	small-subunit processome	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007120	DNA-dir_RNAP_su2_dom	761	930
IPR007641	RNA_pol_Rpb2_7	933	1045
IPR007642	RNA_pol_Rpb2_2	229	397
IPR007644	RNA_pol_bsu_protrusion	42	429
IPR007645	RNA_pol_Rpb2_3	481	545
IPR009674	Rpa2_dom_4	594	670

External Links

No external refs found!

Cre07.g322176 (30775305)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation