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  5. Cre07.g313302

Cre07.g313302 (30774295)


Aliases : 30774295

Description : DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana


Gene families : OG_01_0002473 (OrthoFinder) Phylogenetic Tree(s): OG0002473_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g313302
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020848.19 tig00020848_g14546.t1 DNA-directed RNA polymerases II, IV and V subunit 3... 0.02 OrthoFinder
Cz01g19190.t1 No alias DNA-directed RNA polymerase, insert domain; DNA-directed... 0.08 OrthoFinder
EOD26092 No alias DNA-directed RNA polymerase, insert domain; DNA-directed... 0.02 OrthoFinder
EOD36417 No alias DNA-directed RNA polymerase, insert domain; DNA-directed... 0.02 OrthoFinder
OT_07G03300.1 No alias DNA-directed RNA polymerase, insert domain; DNA-directed... 0.08 OrthoFinder
PTI_11G00480.1 No alias DNA-directed RNA polymerase, RpoA/D/Rpb3-type;... 0.07 OrthoFinder
Sro714_g191720.1 Contig596.g7425 I and III subunit RPAC1 0.04 OrthoFinder
TP14G02080.1 No alias DNA-directed RNA polymerase, insert domain; DNA-directed... 0.02 OrthoFinder
Vocar.0003s0010.1 32889062 DNA-directed RNA polymerase, RpoA/D/Rpb3-type;... 0.03 OrthoFinder
XM_002499505.1 MICPUN_78898, 78898 DNA-directed RNA polymerase, insert domain; DNA-directed... 0.04 OrthoFinder
XM_003058221.1 MicpuC2_57581, 57581 DNA-directed RNA polymerase, RpoA/D/Rpb3-type;... 0.02 OrthoFinder
lcl|BLLF01001143.1_cds_GFH17407.1_11884 HaLaN_14038, GFH17407 RPOLD domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20687.1_5199 PRW20687 DNA-directed RNA polymerases I and III subunit RPAC1 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Enrichment
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR011262 DNA-dir_RNA_pol_insert 103 269
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 71 378
No external refs found!