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  5. Vocar.0037s0083.1

Vocar.0037s0083.1 (32897652)


Aliases : 32897652

Description : RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 4; RNA polymerase, alpha subunit [Interproscan].


Gene families : OG_01_0002297 (OrthoFinder) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0037s0083.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cre12.g529600 30792110 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.11 OrthoFinder
Cz05g31150.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.06 OrthoFinder
Dusal.0073s00015.1 33194603 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.02 OrthoFinder
EOD22189 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.07 OrthoFinder
OT_14G01020.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.04 OrthoFinder
PTI_00G04260.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.03 OrthoFinder
Sro258_g101130.1 Contig315.g4199 DNA-directed RNA polymerase subunit beta' (Fragment) 0.06 OrthoFinder
TP06G00570.1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,... 0.02 OrthoFinder
XM_002505754.1 MICPUN_65110, 65110 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.05 OrthoFinder
XM_003063796.1 MicpuC2_36623, 36623 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.03 OrthoFinder
lcl|BLLF01001934.1_cds_GFH21938.1_16415 HaLaN_19327, GFH21938 DNA-directed RNA polymerase subunit 0.04 OrthoFinder
lcl|BLLF01002728.1_cds_GFH25131.1_19608 HaLaN_23045, GFH25131 DNA-directed RNA polymerase subunit 0.03 OrthoFinder
lcl|LHPG02000006.1_cds_PRW58030.1_8585 PRW58030 DNA-directed RNA polymerase I complex large subunit Nuc1... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005534 galactose binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008193 tRNA guanylyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 1146 1837
IPR007083 RNA_pol_Rpb1_4 1065 1139
IPR007066 RNA_pol_Rpb1_3 768 968
IPR007080 RNA_pol_Rpb1_1 12 231
IPR000722 RNA_pol_asu 558 763
No external refs found!