Vocar.0037s0081.1 (32897572)

Aliases : 32897572

Description : Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381; Ribosomal RNA methyltransferase FtsJ domain; Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan].

Gene families : OG_01_0001052 (OrthoFinder) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0037s0081.1
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g529500	30792231	No description available	0.06	OrthoFinder
Cz10g22050.t1	No alias	Ribosomal RNA methyltransferase FtsJ domain; Ribosomal...	0.03	OrthoFinder
EOD10706	No alias	Ribosomal RNA methyltransferase FtsJ domain; Ribosomal...	0.02	OrthoFinder
OT_16G00640.1	No alias	Ribosomal RNA methyltransferase Spb1, domain of unknown...	0.03	OrthoFinder
PTI_07G00840.1	No alias	Ribosomal RNA methyltransferase, Spb1, C-terminal;...	0.05	OrthoFinder
Sro945_g223150.1	Contig53.g396	27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase	0.05	OrthoFinder
Transcript_contig_55971	55971	Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan].	0.02	OrthoFinder
XM_002508465.1	MICPUN_85499, 85499	Ribosomal RNA methyltransferase FtsJ domain [Interproscan].	0.03	OrthoFinder
XM_003061074.1	MicpuC2_60535, 60535	Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan].	0.03	OrthoFinder
lcl\|LHPG02000009.1_cds_PRW56316.1_10006	PRW56316	AdoMet-dependent rRNA methyltransferase spb1	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Enrichment
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	Enrichment
BP	GO:0001522	pseudouridine synthesis	IEP	Enrichment
MF	GO:0001733	galactosylceramide sulfotransferase activity	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003684	damaged DNA binding	IEP	Enrichment
MF	GO:0003724	RNA helicase activity	IEP	Enrichment
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Enrichment
MF	GO:0004531	deoxyribonuclease II activity	IEP	Enrichment
MF	GO:0004536	deoxyribonuclease activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
CC	GO:0005794	Golgi apparatus	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006284	base-excision repair	IEP	Enrichment
BP	GO:0006289	nucleotide-excision repair	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006643	membrane lipid metabolic process	IEP	Enrichment
BP	GO:0006664	glycolipid metabolic process	IEP	Enrichment
BP	GO:0006887	exocytosis	IEP	Enrichment
BP	GO:0006950	response to stress	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008170	N-methyltransferase activity	IEP	Enrichment
MF	GO:0008276	protein methyltransferase activity	IEP	Enrichment
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	Enrichment
BP	GO:0009247	glycolipid biosynthetic process	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
MF	GO:0015298	solute:cation antiporter activity	IEP	Enrichment
MF	GO:0015299	solute:proton antiporter activity	IEP	Enrichment
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Enrichment
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Enrichment
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
MF	GO:0016889	endodeoxyribonuclease activity, producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Enrichment
MF	GO:0019104	DNA N-glycosylase activity	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
BP	GO:0032940	secretion by cell	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0042054	histone methyltransferase activity	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Enrichment
BP	GO:0046903	secretion	IEP	Enrichment
MF	GO:0050694	galactose 3-O-sulfotransferase activity	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
CC	GO:0099023	vesicle tethering complex	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
BP	GO:0140352	export from cell	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
BP	GO:1903509	liposaccharide metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR012920	rRNA_MeTfrase_Spb1_C	689	880
IPR002877	rRNA_MeTrfase_FtsJ_dom	24	200
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	238	415

External Links

No external refs found!

Vocar.0037s0081.1 (32897572)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation