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  5. Vocar.0031s0098.1

Vocar.0031s0098.1 (32890123)


Aliases : 32890123

Description : Ribonucleotide reductase small subunit family [Interproscan].


Gene families : OG_01_0000968 (OrthoFinder) Phylogenetic Tree(s): OG0000968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0031s0098.1
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
Cre12.g491050 30792193, RIR2 Nucleotide metabolism.deoxynucleotide... 0.08 OrthoFinder
Cz02g24230.t1 No alias Ribonucleotide reductase small subunit family [Interproscan]. 0.03 OrthoFinder
Cz10g18250.t1 No alias Ribonucleotide reductase small subunit family [Interproscan]. 0.02 OrthoFinder
Dusal.0106s00020.1 33193472 Ribonucleotide reductase small subunit family [Interproscan]. 0.02 OrthoFinder
Dusal.0106s00021.1 33193497 Ribonucleotide reductase small subunit family [Interproscan]. 0.03 OrthoFinder
EOD10158 No alias Ribonucleotide reductase small subunit family [Interproscan]. 0.03 OrthoFinder
OT_08G00560.1 No alias Ribonucleotide reductase small subunit family [Interproscan]. 0.03 OrthoFinder
Transcript_contig_54410 54410 Ribonucleotide reductase small subunit family [Interproscan]. 0.01 OrthoFinder
XM_003058319.1 MicpuC2_33344, 33344 Ribonucleotide reductase small subunit family [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000006.1_cds_PRW58060.1_8527 PRW58060 Ribonucleoside-diphosphate reductase small chain isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0009263 deoxyribonucleotide biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
CC GO:0005849 mRNA cleavage factor complex IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006378 mRNA polyadenylation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030896 checkpoint clamp complex IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
InterPro domains Description Start Stop
IPR000358 RNR_small_fam 89 355
No external refs found!