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  5. Vocar.0030s0076.1

Vocar.0030s0076.1 (32894520)


Aliases : 32894520

Description : Fibrillarin [Interproscan].


Gene families : OG_01_0002387 (OrthoFinder) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0030s0076.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001049.16 tig00001049_g6665.t1 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder
Cre02.g077300 30785723, NOP1 RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder
Cz10g07040.t1 No alias Fibrillarin [Interproscan]. 0.05 OrthoFinder
EOD07048 No alias Ubiquitin-like domain; Fibrillarin [Interproscan]. 0.03 OrthoFinder
OT_07G01210.1 No alias Fibrillarin [Interproscan]. 0.03 OrthoFinder
Sro1226_g254200.1 Contig1389.g12811 RRNA 2'-O-methyltransferase fibrillarin 0.02 OrthoFinder
Transcript_contig_54582 54582 Fibrillarin [Interproscan]. 0.02 OrthoFinder
XM_002499943.1 MICPUN_97046, 97046 Fibrillarin [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000026.1_cds_GFH06193.1_670 HaLaN_00783, GFH06193 Fibrillarin [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000255.1_cds_GFH09702.1_4179 HaLaN_04892, GFH09702 Mediator of RNA polymerase II transcription subunit 36a 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59290.1_6872 PRW59290 RRNA 2-O-methyltransferase fibrillarin 0.02 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491508.1_6318 KAA8491508 Putative mediator of RNA polymerase II transcription subunit 36b 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901642 nucleoside transmembrane transport IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000692 Fibrillarin 78 303
No external refs found!