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  5. Vocar.0030s0053.1

Vocar.0030s0053.1 (32894428)


Aliases : 32894428

Description : Splicing factor 3A subunit 1; SWAP/Surp [Interproscan].


Gene families : OG_01_0002237 (OrthoFinder) Phylogenetic Tree(s): OG0002237_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0030s0053.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021501.12 tig00021501_g21952.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Cz14g19320.t1 No alias SWAP/Surp; Splicing factor 3A subunit 1 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_90130 90130 SWAP/Surp; Splicing factor 3A subunit 1 [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003856 3-dehydroquinate synthase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006098 pentose-phosphate shunt IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006740 NADPH regeneration IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0051156 glucose 6-phosphate metabolic process IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
MF GO:0061608 nuclear import signal receptor activity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR022030 SF3A1_dom 249 370
IPR022030 SF3A1_dom 403 509
IPR000061 Surp 180 231
IPR000061 Surp 66 115
No external refs found!