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  5. Vocar.0029s0030.1

Vocar.0029s0030.1 (32887399)


Aliases : 32887399

Description : DNA (cytosine-5)-methyltransferase 1, replication foci domain; C-5 cytosine methyltransferase [Interproscan].


Gene families : OG_01_0000605 (OrthoFinder) Phylogenetic Tree(s): OG0000605_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0029s0030.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cre10.g461750 30790124 Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder
Cz08g20120.t1 No alias DNA (cytosine-5)-methyltransferase 1, replication foci... 0.03 OrthoFinder
Cz14g11270.t1 No alias C-5 cytosine methyltransferase [Interproscan]. 0.05 OrthoFinder
Transcript_contig_78173 78173 DNA (cytosine-5)-methyltransferase 1, replication foci... 0.03 OrthoFinder
lcl|BLLF01000022.1_cds_GFH06104.1_581 HaLaN_00677, GFH06104 Cytosine-specific methyltransferase 0.02 OrthoFinder
lcl|BLLF01000022.1_cds_GFH06107.1_584 HaLaN_00680, GFH06107 Cytosine-specific methyltransferase 0.02 OrthoFinder
lcl|BLLF01001782.1_cds_GFH21213.1_15690 HaLaN_18470, GFH21213 DNA (cytosine-5)-methyltransferase 0.02 OrthoFinder
lcl|BLLF01001782.1_cds_GFH21214.1_15691 HaLaN_18471, GFH21214 Cytosine-specific methyltransferase 0.02 OrthoFinder
lcl|BLLF01002836.1_cds_GFH25512.1_19989 HaLaN_23491, GFH25512 BTB POZ and MATH domain-containing 2-like isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
InterPro domains Description Start Stop
IPR022702 Cytosine_MeTrfase1_RFD 303 460
IPR022702 Cytosine_MeTrfase1_RFD 695 855
IPR001525 C5_MeTfrase 1743 1788
IPR001525 C5_MeTfrase 2157 2221
IPR001525 C5_MeTfrase 1837 1942
No external refs found!