Vocar.0015s0344.1 (32898850)

Aliases : 32898850

Description : WD40 repeat; U box domain [Interproscan].

Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Vocar.0015s0344.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cz07g19110.t1 No alias U box domain [Interproscan]. 0.02 OrthoFinder
EOD28800 No alias BspA type Leucine rich repeat region; RNA recognition... 0.02 OrthoFinder
OT_09G00020.1 No alias U box domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20231.1_5682 PRW20231 U-box domain-containing 4 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003756 protein disulfide isomerase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019321 pentose metabolic process IEP Enrichment
BP GO:0019566 arabinose metabolic process IEP Enrichment
BP GO:0046373 L-arabinose metabolic process IEP Enrichment
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 56 125
IPR001680 WD40_repeat 147 180
IPR001680 WD40_repeat 345 380
IPR001680 WD40_repeat 305 340
IPR001680 WD40_repeat 185 220
IPR001680 WD40_repeat 265 300
IPR001680 WD40_repeat 385 420
IPR001680 WD40_repeat 426 460
IPR001680 WD40_repeat 225 260
No external refs found!