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  5. Vocar.0007s0049.1

Vocar.0007s0049.1 (32888024)


Aliases : 32888024

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000110 (OrthoFinder) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0007s0049.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cre01.g021600 30789366 DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre12.g539100 30792646 DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa... 0.05 OrthoFinder
Cre12.g540200 30792196 DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.08 OrthoFinder
Cz05g19260.t1 No alias Helicase, C-terminal; WW domain; DEAD/DEAH box helicase... 0.02 OrthoFinder
Cz05g23220.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Cz05g24090.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
Cz07g14080.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Cz11g20100.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.0077s00030.1 33192455 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Dusal.0390s00008.1 33199535 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0466s00003.1 33194842 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
Dusal.0676s00006.1 33185522 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
EOD29280 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
EOD38751 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.09 OrthoFinder
OT_07G01830.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
OT_10G00150.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
OT_12G00350.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain; WW... 0.03 OrthoFinder
OT_17G02300.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
PTI_00G03690.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
PTI_04G04860.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
Sro1046_g235060.1 Contig1884.g16427 Dependent RNA helicase 0.07 OrthoFinder
Sro1103_g241740.1 Contig4430.g33251 Dependent RNA helicase 0.03 OrthoFinder
Sro3572_g349270.1 Contig4413.g33150 RNA helicase DBP2 0.03 OrthoFinder
SymbC1.scaffold12489.1 12489.1 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.01 OrthoFinder
SymbC1.scaffold406.3 406.3 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.01 OrthoFinder
TP01G06480.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
TP03G06040.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
TP15G01530.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Transcript_contig_56606 56606 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Transcript_contig_56629 56629 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
XM_002499634.1 MICPUN_67469, 67469 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
XM_002502614.1 MICPUN_58886, 58886 DEAD/DEAH box helicase 0.05 OrthoFinder
XM_002504616.1 MICPUN_97883, 97883 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
XM_003063731.1 MicpuC2_22564, 22564 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
XM_003064188.1 MicpuC2_46013, 46013 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
XM_003064706.1 MicpuC2_45119, 45119 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
lcl|BLLF01000115.1_cds_GFH07782.1_2259 HaLaN_02635, GFH07782 DEAD box RNA helicase 0.03 OrthoFinder
lcl|BLLF01001123.1_cds_GFH17278.1_11755 HaLaN_13879, GFH17278 DEAD box RNA helicase 0.01 OrthoFinder
lcl|BLLF01001123.1_cds_GFH17279.1_11756 HaLaN_13880, GFH17279 Hypothetical protein 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59081.1_7009 PRW59081 DEAD-box ATP-dependent RNA helicase 20-like 0.05 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59097.1_7373 PRW59097 DEAD-box ATP-dependent RNA helicase 24 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56606.1_9693 PRW56606 DEAD-box ATP-dependent RNA helicase 20 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498053.1_7006 KAA8498053 DEAD-box ATP-dependent RNA helicase 5 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005534 galactose binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 188 424
IPR001650 Helicase_C 482 579
No external refs found!