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  5. Vocar.0004s0017.1

Vocar.0004s0017.1 (32889637)


Aliases : 32889637

Description : U1 small nuclear ribonucleoprotein of 70kDa N-terminal; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0002840 (OrthoFinder) Phylogenetic Tree(s): OG0002840_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0004s0017.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Cre16.g656250 30778170 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Dusal.0911s00001.1 33191409 Hypothetical protein 0.02 OrthoFinder
Sro263_g102290.1 Contig612.g7551 U12 small nuclear ribonucleoprotein 35 kDa protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0001733 galactosylceramide sulfotransferase activity IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005794 Golgi apparatus IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
MF GO:0019781 NEDD8 activating enzyme activity IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045116 protein neddylation IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
MF GO:0050694 galactose 3-O-sulfotransferase activity IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 153 221
IPR022023 U1snRNP70_N 32 142
No external refs found!