1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0001s1778.1

Vocar.0001s1778.1 (32885246)


Aliases : 32885246

Description : E3 ligase, CCCH-type zinc finger; tRNA-dihydrouridine synthase [Interproscan].


Gene families : OG_01_0001054 (OrthoFinder) Phylogenetic Tree(s): OG0001054_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1778.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.80 tig00000241_g20942.t1 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.02 OrthoFinder
Cre04.g229948 30791118 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.04 OrthoFinder
Cz12g22180.t1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.03 OrthoFinder
Dusal.0362s00014.1 33189274 tRNA-dihydrouridine synthase [Interproscan]. 0.01 OrthoFinder
EOD04070 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.03 OrthoFinder
OT_10G01720.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.07 OrthoFinder
PTI_12G00560.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
Sro767_g199550.1 Contig2377.g19543 Synthase 0.03 OrthoFinder
TP03G09810.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
XM_002502940.1 MICPUN_66278, 66278 tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01005284.1_cds_GFH31005.1_25482 HaLaN_29949, GFH31005 TRNA-dihydrouridine synthase 3 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61399.1_401 PRW61399 TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901642 nucleoside transmembrane transport IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 104 124
IPR001269 DUS_fam 473 722
No external refs found!