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  5. Vocar.0001s1275.1

Vocar.0001s1275.1 (32885136)


Aliases : 32885136

Description : Histidine kinase/HSP90-like ATPase; TOPRIM domain; DNA topoisomerase, type IIA, subunit B, domain 2; DNA gyrase B subunit, C-terminal [Interproscan].


Gene families : OG_01_0001296 (OrthoFinder) Phylogenetic Tree(s): OG0001296_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s1275.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cz09g08230.t1 No alias Histidine kinase/HSP90-like ATPase; DNA gyrase B... 0.03 OrthoFinder
Transcript_contig_54093 54093 Histidine kinase/HSP90-like ATPase [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0004143 diacylglycerol kinase activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR003594 HATPase_C 114 259
IPR013506 Topo_IIA_bsu_dom2 396 567
IPR006171 TOPRIM_domain 596 725
IPR002288 DNA_gyrase_B_C 761 821
No external refs found!