Vocar.0001s0178.1 (32884459)


Aliases : 32884459

Description : Serine/threonine-protein kinase SMG1; Phosphatidylinositol 3-/4-kinase, catalytic domain; FATC domain [Interproscan].


Gene families : OG_01_0000135 (OrthoFinder) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0001s0178.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Cz05g00140.t1 No alias Phosphatidylinositol 3-/4-kinase, catalytic domain;... 0.04 OrthoFinder
Cz08g18200.t1 No alias Serine/threonine-protein kinase SMG1;... 0.02 OrthoFinder
Cz12g22120.t1 No alias FATC domain; PIK-related kinase, FAT;... 0.02 OrthoFinder
Cz14g13010.t1 No alias Phosphatidylinositol 3-/4-kinase, catalytic domain; FATC... 0.02 OrthoFinder
EOD22260 No alias FATC domain; Phosphatidylinositol 3-/4-kinase, catalytic... 0.01 OrthoFinder
EOD22370 No alias FATC domain; Phosphatidylinositol 3-/4-kinase, catalytic... 0.02 OrthoFinder
EOD29434 No alias Putative target of rapamycin protein [Ensembl]. 0.02 OrthoFinder
OT_07G03600.1 No alias PIK-related kinase, FAT; UME domain;... 0.02 OrthoFinder
OT_12G01910.1 No alias Phosphatidylinositol 3-/4-kinase, catalytic domain; FATC... 0.03 OrthoFinder
OT_12G01920.1 No alias Phosphatidylinositol 3-/4-kinase, catalytic domain; FATC... 0.02 OrthoFinder
Transcript_contig_2749 2749 Hypothetical protein 0.01 OrthoFinder
XM_003054790.1 MicpuC2_30638, 30638 Phosphatidylinositol 3-/4-kinase, catalytic domain; FATC... 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44905.1_1810 PRW44905 Serine threonine-kinase ATR 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA Interproscan
MF GO:0004674 protein serine/threonine kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016310 phosphorylation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004819 glutamine-tRNA ligase activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030014 CCR4-NOT complex IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR003152 FATC_dom 4680 4710
IPR000403 PI3/4_kinase_cat_dom 2691 2984
IPR031559 SMG1 1237 1384
IPR031559 SMG1 1615 1710
No external refs found!