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  5. TPCG00740.1

TPCG00740.1


Description : RNA polymerase Rpb2, domain 7; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; RNA polymerase Rpb2, domain 3; DNA-directed RNA polymerase, beta subunit, external 1 domain [Interproscan].


Gene families : OG_01_0001998 (OrthoFinder) Phylogenetic Tree(s): OG0001998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TPCG00740.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
CzCPg00110.t1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.03 OrthoFinder
CzCPg00120.t1 No alias RNA polymerase Rpb2, domain 3; DNA-directed RNA... 0.03 OrthoFinder
CzCPg01240.t1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.01 OrthoFinder
Sro51_chlor_g030150.1 RpoC1 RpoC1 0.03 OrthoFinder
Sro51_chlor_g030160.1 RpoB RpoB 0.02 OrthoFinder
Transcript_contig_42167 42167 RNA polymerase Rpb2, domain 3 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58634 58634 RNA polymerase Rpb2, domain 2 [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004411 homogentisate 1,2-dioxygenase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
BP GO:0006559 L-phenylalanine catabolic process IEP Enrichment
BP GO:0006570 tyrosine metabolic process IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009074 aromatic amino acid family catabolic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007644 RNA_pol_bsu_protrusion 64 643
IPR007641 RNA_pol_Rpb2_7 1273 1346
IPR007120 DNA-dir_RNAP_su2_dom 874 1271
IPR007642 RNA_pol_Rpb2_2 463 613
IPR019462 DNA-dir_RNA_pol_bsu_external_1 747 812
IPR007645 RNA_pol_Rpb2_3 667 735
No external refs found!