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  5. TP23G00340.1

TP23G00340.1


Description : WD40 repeat; BOP1, N-terminal domain [Interproscan].


Gene families : OG_01_0003084 (OrthoFinder) Phylogenetic Tree(s): OG0003084_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP23G00340.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000382.38 tig00000382_g24574.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder
Cre10.g417950 30790890 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cz12g21250.t1 No alias WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.06 OrthoFinder
Dusal.1024s00004.1 33196168 WD40 repeat [Interproscan]. 0.02 OrthoFinder
EOD13489 No alias WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.02 OrthoFinder
OT_02G00440.1 No alias BOP1, N-terminal domain [Interproscan]. 0.02 OrthoFinder
PTI_28G01560.1 No alias BOP1, N-terminal domain; WD40 repeat [Interproscan]. 0.15 OrthoFinder
Sro345_g122580.1 Contig2266.g18817 Ribosome biogenesis protein BOP1 0.05 OrthoFinder
Transcript_contig_58163 58163 BOP1, N-terminal domain; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Transcript_contig_82257 82257 WD40 repeat [Interproscan]. 0.03 OrthoFinder
Vocar.0025s0201.1 32898403 WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000633.1_cds_GFH13620.1_8097 HaLaN_09545, GFH13620 Ribosome biogenesis protein BOP1 homolog 0.05 OrthoFinder
lcl|BLLF01001331.1_cds_GFH18637.1_13114 HaLaN_15473, GFH18637 Ribosome biogenesis protein BOP1 homolog 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59011.1_7240 PRW59011 Ribosome biogenesis BOP1-like protein 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 411 438
IPR001680 WD40_repeat 725 764
IPR001680 WD40_repeat 676 709
IPR012953 BOP1_N_dom 132 393
No external refs found!