1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP16G01590.1

TP16G01590.1


Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0002942 (OrthoFinder) Phylogenetic Tree(s): OG0002942_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP16G01590.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020943.85 tig00020943_g16324.t1 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.04 OrthoFinder
Cre01.g022350 30788877 DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz07g11140.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
EOD12093 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
OT_13G01240.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
PTI_08G00230.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
Sro1969_g308510.1 Contig3149.g24979 Dependent RNA helicase 0.08 OrthoFinder
Transcript_contig_57722 57722 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
Vocar.0007s0285.1 32887858 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.04 OrthoFinder
XM_002503322.1 MICPUN_59612, 59612 Helicase 0.05 OrthoFinder
XM_003058331.1 MicpuC2_39643, 39643 Helicase 0.05 OrthoFinder
lcl|BLLF01000814.1_cds_GFH15161.1_9638 HaLaN_11338, GFH15161 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59446.1_6695 PRW59446 DEAD-box ATP-dependent RNA helicase 13 isoform A 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 605 716
IPR011545 DEAD/DEAH_box_helicase_dom 215 496
No external refs found!