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  5. TP16G01210.1

TP16G01210.1


Description : DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0002251 (OrthoFinder) Phylogenetic Tree(s): OG0002251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP16G01210.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cre07.g349300 30774622 DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.11 OrthoFinder
Cz10g14210.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
Cz10g14330.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.0178s00006.1 33194016 DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
OT_07G02410.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
PTI_04G03470.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Sro248_g098230.1 Contig288.g3757 Dependent RNA helicase 0.04 OrthoFinder
XM_002499572.1 MICPUN_67266, 67266 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
XM_003058161.1 MicpuC2_2115, 2115 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51077.1_1015 PRW51077 DEAD-box ATP-dependent RNA helicase mitochondrial 0.12 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491854.1_4862 KAA8491854 DEAD-box ATP-dependent RNA helicase 47B 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006177 GMP biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046037 GMP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 8 156
No external refs found!