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  5. TP16G00520.1

TP16G00520.1


Description : U3 small nucleolar RNA-associated protein 6 [Interproscan].


Gene families : OG_01_0002785 (OrthoFinder) Phylogenetic Tree(s): OG0002785_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP16G00520.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000571.29 tig00000571_g2183.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cre10.g442000 30790656 Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder
Cz03g13170.t1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.05 OrthoFinder
Dusal.0174s00015.1 33196283 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.03 OrthoFinder
EOD04628 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.04 OrthoFinder
EOD34666 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.01 OrthoFinder
PTI_08G02440.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.1 OrthoFinder
Sro757_g197930.1 Contig322.g4282 RNA-associated protein 6 homolog 0.13 OrthoFinder
Transcript_contig_66361 66361 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1250.1 32884322 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57423.1_9057 PRW57423 U3 small nucleolar RNA-associated 6-like protein 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499489.1_8442 KAA8499489 U3 small nucleolar RNA-associated protein 6 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR013949 Utp6 9 82
No external refs found!