Description : RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].
Gene families : OG_01_0001971 (OrthoFinder) Phylogenetic Tree(s): OG0001971_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: TP14G01310.1 | |
Cluster | HCCA: Cluster_43 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000711.41 | tig00000711_g3404.t1 | Cell cycle.mitosis and meiosis.chromatin... | 0.04 | OrthoFinder | |
Cre12.g493400 | 30791789, SMC4 | Cell cycle.mitosis and meiosis.chromatin... | 0.04 | OrthoFinder | |
Cz03g14220.t1 | No alias | RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. | 0.04 | OrthoFinder | |
Cz03g14230.t1 | No alias | RecF/RecN/SMC, N-terminal [Interproscan]. | 0.05 | OrthoFinder | |
Dusal.0297s00010.1 | 33197376 | RecF/RecN/SMC, N-terminal [Interproscan]. | 0.02 | OrthoFinder | |
EOD07120 | No alias | RecF/RecN/SMC, N-terminal [Interproscan]. | 0.06 | OrthoFinder | |
EOD10750 | No alias | RecF/RecN/SMC, N-terminal [Interproscan]. | 0.05 | OrthoFinder | |
EOD30554 | No alias | SMCs flexible hinge [Interproscan]. | 0.05 | OrthoFinder | |
EOD40964 | No alias | RecF/RecN/SMC, N-terminal [Interproscan]. | 0.01 | OrthoFinder | |
OT_06G01300.1 | No alias | RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. | 0.05 | OrthoFinder | |
PTI_03G05440.1 | No alias | RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. | 0.07 | OrthoFinder | |
Sro1170_g248720.1 | Contig3531.g27301 | Structural maintenance of chromosomes protein 4 (Fragment) | 0.06 | OrthoFinder | |
Vocar.0031s0036.1 | 32890031 | SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. | 0.02 | OrthoFinder | |
XM_002500796.1 | MICPUN_56721, 56721 | Condensin complex component | 0.05 | OrthoFinder | |
XM_003059384.1 | MicpuC2_33825, 33825 | Condensin complex component | 0.03 | OrthoFinder | |
lcl|BLLF01001573.1_cds_GFH20090.1_14567 | HaLaN_17159, GFH20090 | Structural maintenance of chromosomes protein 4 | 0.02 | OrthoFinder | |
lcl|LHPG02000007.1_cds_PRW57046.1_8805 | PRW57046 | Structural maintenance of chromosomes 4 | 0.04 | OrthoFinder | |
lcl|VRMN01000001.1_cds_KAA8499969.1_8922 | KAA8499969 | Structural maintenance of chromosomes protein 4 | 0.06 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
CC | GO:0005694 | chromosome | IEA | Interproscan |
BP | GO:0051276 | chromosome organization | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000796 | condensin complex | IEP | Enrichment |
MF | GO:0003774 | motor activity | IEP | Enrichment |
MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
CC | GO:0005667 | transcription regulator complex | IEP | Enrichment |
BP | GO:0006323 | DNA packaging | IEP | Enrichment |
BP | GO:0006694 | steroid biosynthetic process | IEP | Enrichment |
BP | GO:0006720 | isoprenoid metabolic process | IEP | Enrichment |
BP | GO:0007076 | mitotic chromosome condensation | IEP | Enrichment |
MF | GO:0008017 | microtubule binding | IEP | Enrichment |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Enrichment |
BP | GO:0008202 | steroid metabolic process | IEP | Enrichment |
BP | GO:0008299 | isoprenoid biosynthetic process | IEP | Enrichment |
BP | GO:0008608 | attachment of spindle microtubules to kinetochore | IEP | Enrichment |
BP | GO:0008610 | lipid biosynthetic process | IEP | Enrichment |
MF | GO:0015631 | tubulin binding | IEP | Enrichment |
BP | GO:0016125 | sterol metabolic process | IEP | Enrichment |
BP | GO:0016126 | sterol biosynthetic process | IEP | Enrichment |
CC | GO:0016459 | myosin complex | IEP | Enrichment |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
BP | GO:0022402 | cell cycle process | IEP | Enrichment |
BP | GO:0030261 | chromosome condensation | IEP | Enrichment |
CC | GO:0031262 | Ndc80 complex | IEP | Enrichment |
CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
BP | GO:0051315 | attachment of mitotic spindle microtubules to kinetochore | IEP | Enrichment |
BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Enrichment |
BP | GO:1903047 | mitotic cell cycle process | IEP | Enrichment |
No external refs found! |