TP13G00410.1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0000904 (OrthoFinder) Phylogenetic Tree(s): OG0000904_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP13G00410.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020912.17 tig00020912_g15787.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder
Cre10.g455300 30789915 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder
Cz06g34330.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD19002 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD28507 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
Sro479_g151180.1 Contig1858.g16253 Ribonucleoprotein Sm D3 0.03 OrthoFinder
XM_002507873.1 MICPUN_84175, 84175 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59229.1_7217 PRW59229 Small nuclear ribonucleo Sm D3 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57070.1_9277 PRW57070 Putative U6 snRNA-associated Sm LSm4 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 90 140
No external refs found!