Description : LSM domain, eukaryotic/archaea-type [Interproscan].
Gene families : OG_01_0000904 (OrthoFinder) Phylogenetic Tree(s): OG0000904_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: TP13G00410.1 | |
Cluster | HCCA: Cluster_60 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00020912.17 | tig00020912_g15787.t1 | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder | |
Cre10.g455300 | 30789915 | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder | |
Cz06g34330.t1 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder | |
EOD19002 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder | |
EOD28507 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.03 | OrthoFinder | |
Sro479_g151180.1 | Contig1858.g16253 | Ribonucleoprotein Sm D3 | 0.03 | OrthoFinder | |
XM_002507873.1 | MICPUN_84175, 84175 | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder | |
lcl|LHPG02000004.1_cds_PRW59229.1_7217 | PRW59229 | Small nuclear ribonucleo Sm D3 | 0.02 | OrthoFinder | |
lcl|LHPG02000007.1_cds_PRW57070.1_9277 | PRW57070 | Putative U6 snRNA-associated Sm LSm4 | 0.01 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005215 | transporter activity | IEP | Enrichment |
MF | GO:0005216 | ion channel activity | IEP | Enrichment |
MF | GO:0015267 | channel activity | IEP | Enrichment |
MF | GO:0022803 | passive transmembrane transporter activity | IEP | Enrichment |
MF | GO:0022857 | transmembrane transporter activity | IEP | Enrichment |
BP | GO:0055085 | transmembrane transport | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001163 | LSM_dom_euk/arc | 90 | 140 |
No external refs found! |