TP12G00540.1


Description : ABC transporter-like; ABC transporter type 1, transmembrane domain [Interproscan].


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP12G00540.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021127.70 tig00021127_g18747.t1 ABC transporter B family member 25 OS=Oryza sativa... 0.02 OrthoFinder
Cpa|evm.model.tig00021434.18 tig00021434_g21315.t1 ABC transporter B family member 14 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre17.g725200 30782751 ABC transporter B family member 12 OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD31963 No alias Putative ABC transporter [Ensembl]. 0.01 OrthoFinder
SymbC1.scaffold3653.4 3653.4 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
SymbC1.scaffold73.72 73.72 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
Transcript_contig_2557 2557 Hypothetical protein 0.01 OrthoFinder
Vocar.0023s0168.1 32883330 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
XM_003060400.1 MicpuC2_19395, 19395 ATP-binding cassette superfamily 0.03 OrthoFinder
lcl|BLLF01000498.1_cds_GFH12387.1_6864 HaLaN_08064, GFH12387 ATP-binding cassette, subfamily B(MDR/TAP), member 1 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494946.1_3476 KAA8494946 Multidrug resistance protein 1B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004448 isocitrate dehydrogenase activity IEP Enrichment
MF GO:0004450 isocitrate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 371 523
IPR011527 ABC1_TM_dom 3 267
IPR011527 ABC1_TM_dom 678 950
IPR003439 ABC_transporter-like_ATP-bd 1043 1191
No external refs found!