1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP06G02960.1

TP06G02960.1


Description : ATP-dependent RNA helicase Ski2, C-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP06G02960.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Dusal.0050s00027.1 33193848 DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0027s0117.1 32887258 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495540.1_1538 KAA8495540 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 0.01 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492476.1_9169 KAA8492476 DExH-box ATP-dependent RNA helicase DExH11 0.01 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491098.1_9855 KAA8491098 Superkiller viralicidic activity 2-like 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006013 mannose metabolic process IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 410 518
IPR012961 Ski2_C 927 1047
IPR011545 DEAD/DEAH_box_helicase_dom 87 242
No external refs found!