1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP06G01060.1

TP06G01060.1


Description : MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan].


Gene families : OG_01_0003371 (OrthoFinder) Phylogenetic Tree(s): OG0003371_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP06G01060.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre06.g295700 30778933, MCM3 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.03 OrthoFinder
Cz08g29130.t1 No alias MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.02 OrthoFinder
EOD39699 No alias MCM OB domain; MCM N-terminal domain; MCM, AAA-lid... 0.02 OrthoFinder
PTI_03G02720.1 No alias MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan]. 0.06 OrthoFinder
Transcript_contig_53738 53738 MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.02 OrthoFinder
Vocar.0021s0184.1 32896084 MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.02 OrthoFinder
lcl|BLLF01000441.1_cds_GFH11838.1_6315 HaLaN_07407, GFH11838 DNA helicase 0.03 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44413.1_2299 PRW44413 DNA replication licensing factor MCM3 0.03 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493736.1_4498 KAA8493736 DNA replication licensing factor mcm3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR001208 MCM_dom 233 454
IPR041562 MCM_lid 505 585
IPR033762 MCM_OB 45 192
No external refs found!