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  5. TP05G03850.1

TP05G03850.1


Description : Ribosomal RNA adenine methyltransferase KsgA/Erm [Interproscan].


Gene families : OG_01_0000842 (OrthoFinder) Phylogenetic Tree(s): OG0000842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP05G03850.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021348.95 tig00021348_g20602.t1 Ribosomal RNA small subunit methyltransferase... 0.02 OrthoFinder
Cre01.g042900 30789042 RNA processing.RNA modification.rRNA/tRNA... 0.12 OrthoFinder
Cre06.g309300 30779686 Ribosomal RNA small subunit methyltransferase,... 0.01 OrthoFinder
Dusal.1110s00002.1 33202836 Ribosomal RNA adenine methyltransferase KsgA/Erm [Interproscan]. 0.01 OrthoFinder
PTI_17G02720.1 No alias Ribosomal RNA adenine methyltransferase KsgA/Erm [Interproscan]. 0.03 OrthoFinder
Sro2218_g319550.1 Contig3225.g25511 Probable dimethyladenosine transferase 0.12 OrthoFinder
Vocar.0015s0033.1 32898815 Ribosomal RNA adenine methyltransferase KsgA/Erm [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44303.1_2409 PRW44303 Dimethyladenosine transferase 0.11 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494275.1_4139 KAA8494275 Ribosomal RNA small subunit methyltransferase A 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001737 KsgA/Erm 52 278
No external refs found!