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  5. TP04G08130.1

TP04G08130.1


Description : Ribosomal protein L24e-related [Interproscan].


Gene families : OG_01_0003386 (OrthoFinder) Phylogenetic Tree(s): OG0003386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G08130.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001093.10 tig00001093_g6885.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cre07.g325712 30774763 Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder
PTI_17G01470.1 No alias Ribosomal protein L24e-related [Interproscan]. 0.05 OrthoFinder
Sro635_g179190.1 Contig3513.g27220 Probable ribosome biogenesis protein RLP24 0.05 OrthoFinder
SymbC1.scaffold1547.2 1547.2 Ribosomal protein L24e-related [Interproscan]. 0.01 OrthoFinder
Transcript_contig_56957 56957 Ribosomal protein L24e-related [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58481.1_7847 PRW58481 Putative ribosome biogenesis RLP24 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494136.1_4000 KAA8494136 Putative ribosome biogenesis protein RLP24 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000988 Ribosomal_L24e-rel 1 64
No external refs found!