TP03G07990.1


Description : Ribosome biogenesis protein Slx9-like [Interproscan].


Gene families : OG_01_0003720 (OrthoFinder) Phylogenetic Tree(s): OG0003720_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP03G07990.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
EOD41762 No alias Ribosome biogenesis protein Slx9-like [Interproscan]. 0.02 OrthoFinder
PTI_03G00830.1 No alias Ribosome biogenesis protein Slx9-like [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491869.1_4877 KAA8491869 Ribosome biogenesis protein Slx9-like [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
CC GO:0030686 90S preribosome IEA Interproscan
CC GO:0030688 preribosome, small subunit precursor IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR028160 Slx9-like 46 162
No external refs found!