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  5. TP02G07610.1

TP02G07610.1


Description : DNA-directed RNA polymerase, N-terminal; DNA-directed RNA polymerase, phage-type [Interproscan].


Gene families : OG_01_0004012 (OrthoFinder) Phylogenetic Tree(s): OG0004012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G07610.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cz11g01070.t1 No alias DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.02 OrthoFinder
PTI_22G01800.1 No alias DNA-directed RNA polymerase, phage-type; DNA-directed... 0.07 OrthoFinder
Sro453_g146140.1 Contig1693.g15171 RNA polymerase 2, chloroplastic/mitochondrial 0.05 OrthoFinder
Transcript_contig_57975 57975 DNA-directed RNA polymerase, N-terminal [Interproscan]. 0.03 OrthoFinder
Vocar.0001s1539.1 32884920 DNA-directed RNA polymerase, N-terminal; DNA-directed... 0.02 OrthoFinder
XM_003059239.1 MicpuC2_17826, 17826 DNA-directed RNA polymerase, phage-type; DNA-directed... 0.05 OrthoFinder
lcl|BLLF01004360.1_cds_GFH29467.1_23944 HaLaN_28127, GFH29467 DNA-directed RNA polymerase 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32901.1_3668 PRW32901 DNA-directed RNA polymerase chloroplastic mitochondrial 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499719.1_8672 KAA8499719 DNA-directed RNA polymerase 3, chloroplastic 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002092 DNA-dir_Rpol_phage-type 184 594
IPR029262 RPOL_N 5 61
No external refs found!