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  5. TP02G06580.1

TP02G06580.1


Description : Nucleolar, Nop52 [Interproscan].


Gene families : OG_01_0003254 (OrthoFinder) Phylogenetic Tree(s): OG0003254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G06580.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020943.93 tig00020943_g16333.t1 No description available 0.03 OrthoFinder
Cre01.g019200 30788766 No description available 0.09 OrthoFinder
EOD09537 No alias Nucleolar, Nop52 [Interproscan]. 0.08 OrthoFinder
OT_14G00850.1 No alias Nucleolar, Nop52 [Interproscan]. 0.11 OrthoFinder
PTI_04G01930.1 No alias Nucleolar, Nop52 [Interproscan]. 0.02 OrthoFinder
Sro550_g164740.1 Contig731.g8404 RNA processing protein 1 homolog B 0.12 OrthoFinder
Transcript_contig_89618 89618 Nucleolar, Nop52 [Interproscan]. 0.02 OrthoFinder
UNPLg00194.t1 No alias Nucleolar, Nop52 [Interproscan]. 0.03 OrthoFinder
Vocar.0045s0054.1 32887813 Nucleolar, Nop52 [Interproscan]. 0.04 OrthoFinder
XM_002505441.1 MICPUN_87731, 87731 Nucleolar, Nop52 [Interproscan]. 0.16 OrthoFinder
XM_003059715.1 MicpuC2_18763, 18763 Nucleolar, Nop52 [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01000680.1_cds_GFH14040.1_8517 HaLaN_10013, GFH14040 Nucleolar, Nop52 [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18349.1_5786 PRW18349 Ribosomal RNA processing 1-like protein 0.13 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496889.1_618 KAA8496889 Ribosomal RNA processing protein 1-like A 0.08 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0030688 preribosome, small subunit precursor IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR010301 Nop52 99 407
No external refs found!