Description : Nucleolar, Nop52 [Interproscan].
Gene families : OG_01_0003254 (OrthoFinder) Phylogenetic Tree(s): OG0003254_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: TP02G06580.1 | |
Cluster | HCCA: Cluster_21 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00020943.93 | tig00020943_g16333.t1 | No description available | 0.03 | OrthoFinder | |
Cre01.g019200 | 30788766 | No description available | 0.09 | OrthoFinder | |
EOD09537 | No alias | Nucleolar, Nop52 [Interproscan]. | 0.08 | OrthoFinder | |
OT_14G00850.1 | No alias | Nucleolar, Nop52 [Interproscan]. | 0.11 | OrthoFinder | |
PTI_04G01930.1 | No alias | Nucleolar, Nop52 [Interproscan]. | 0.02 | OrthoFinder | |
Sro550_g164740.1 | Contig731.g8404 | RNA processing protein 1 homolog B | 0.12 | OrthoFinder | |
Transcript_contig_89618 | 89618 | Nucleolar, Nop52 [Interproscan]. | 0.02 | OrthoFinder | |
UNPLg00194.t1 | No alias | Nucleolar, Nop52 [Interproscan]. | 0.03 | OrthoFinder | |
Vocar.0045s0054.1 | 32887813 | Nucleolar, Nop52 [Interproscan]. | 0.04 | OrthoFinder | |
XM_002505441.1 | MICPUN_87731, 87731 | Nucleolar, Nop52 [Interproscan]. | 0.16 | OrthoFinder | |
XM_003059715.1 | MicpuC2_18763, 18763 | Nucleolar, Nop52 [Interproscan]. | 0.08 | OrthoFinder | |
lcl|BLLF01000680.1_cds_GFH14040.1_8517 | HaLaN_10013, GFH14040 | Nucleolar, Nop52 [Interproscan]. | 0.04 | OrthoFinder | |
lcl|LHPG02000026.1_cds_PRW18349.1_5786 | PRW18349 | Ribosomal RNA processing 1-like protein | 0.13 | OrthoFinder | |
lcl|VRMN01000002.1_cds_KAA8496889.1_618 | KAA8496889 | Ribosomal RNA processing protein 1-like A | 0.08 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006364 | rRNA processing | IEA | Interproscan |
CC | GO:0030688 | preribosome, small subunit precursor | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Enrichment |
MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
BP | GO:0001510 | RNA methylation | IEP | Enrichment |
MF | GO:0003674 | molecular_function | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0005488 | binding | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
MF | GO:0005524 | ATP binding | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
CC | GO:0005634 | nucleus | IEP | Enrichment |
CC | GO:0005730 | nucleolus | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
MF | GO:0016887 | ATPase | IEP | Enrichment |
MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
MF | GO:0030515 | snoRNA binding | IEP | Enrichment |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
CC | GO:0030686 | 90S preribosome | IEP | Enrichment |
BP | GO:0031167 | rRNA methylation | IEP | Enrichment |
CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
BP | GO:0032259 | methylation | IEP | Enrichment |
MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
MF | GO:0036094 | small molecule binding | IEP | Enrichment |
BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Enrichment |
MF | GO:0043167 | ion binding | IEP | Enrichment |
MF | GO:0043168 | anion binding | IEP | Enrichment |
BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
BP | GO:0070475 | rRNA base methylation | IEP | Enrichment |
BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Enrichment |
MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Enrichment |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR010301 | Nop52 | 99 | 407 |
No external refs found! |