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  5. TP02G04330.1

TP02G04330.1


Description : CCAAT-binding factor [Interproscan].


Gene families : OG_01_0002310 (OrthoFinder) Phylogenetic Tree(s): OG0002310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G04330.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020693.9 tig00020693_g13015.t1 No description available 0.04 OrthoFinder
Cre16.g659600 30777240 No description available 0.06 OrthoFinder
Cz10g13160.t1 No alias Nucleolar complex-associated protein 3, N-terminal;... 0.03 OrthoFinder
EOD41759 No alias Nucleolar complex-associated protein 3, N-terminal... 0.03 OrthoFinder
OT_02G02720.1 No alias CCAAT-binding factor; Nucleolar complex-associated... 0.05 OrthoFinder
PTI_02G02330.1 No alias CCAAT-binding factor; Nucleolar complex-associated... 0.08 OrthoFinder
Sro1310_g261690.1 Contig1983.g16983 Nucleolar complex protein 3 homolog 0.11 OrthoFinder
XM_002506034.1 MICPUN_103981, 103981 Nucleolar complex-associated protein 3, N-terminal;... 0.07 OrthoFinder
XM_003062438.1 MicpuC2_4239, 4239 CCAAT-binding factor [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495933.1_1931 KAA8495933 Nucleolar complex protein 3-like 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016987 sigma factor activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 95 201
No external refs found!