TP02G03700.1

Description : WD40 repeat; Small-subunit processome, Utp21 [Interproscan].

Gene families : OG_01_0002791 (OrthoFinder) Phylogenetic Tree(s): OG0002791_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: TP02G03700.1
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021348.51	tig00021348_g20554.t1	No description available	0.05	OrthoFinder
Cre10.g466250	30790775	No description available	0.13	OrthoFinder
Cz08g20100.t1	No alias	WD40 repeat; Small-subunit processome, Utp21 [Interproscan].	0.08	OrthoFinder
Dusal.0063s00009.1	33196767	WD40 repeat; Small-subunit processome, Utp21 [Interproscan].	0.03	OrthoFinder
EOD22329	No alias	WD40 repeat; Small-subunit processome, Utp21 [Interproscan].	0.08	OrthoFinder
OT_17G00290.1	No alias	Small-subunit processome, Utp21; WD40 repeat;...	0.04	OrthoFinder
PTI_01G00980.1	No alias	Small-subunit processome, Utp21; WD40 repeat [Interproscan].	0.17	OrthoFinder
Sro1313_g261950.1	Contig4199.g31963	RNA-associated protein 21 homolog	0.17	OrthoFinder
Transcript_contig_5700	5700	Hypothetical protein	0.01	OrthoFinder
Vocar.0029s0128.1	32887338	WD40 repeat; Small-subunit processome, Utp21 [Interproscan].	0.03	OrthoFinder
XM_002508565.1	MICPUN_98006, 98006	Small-subunit processome, Utp21; WD40 repeat [Interproscan].	0.08	OrthoFinder
lcl\|BLLF01000022.1_cds_GFH06094.1_571	HaLaN_00667, GFH06094	Small-subunit processome, Utp21 [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01001420.1_cds_GFH19190.1_13667	HaLaN_16097, GFH19190	U3 small nucleolar RNA-associated 21-like protein	0.03	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58237.1_8075	PRW58237	U3 small nucleolar RNA-associated 21-like protein	0.1	OrthoFinder
lcl\|VRMN01000009.1_cds_KAA8492447.1_9140	KAA8492447	WD repeat-containing protein 36	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
BP	GO:0009116	nucleoside metabolic process	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Enrichment
BP	GO:0030490	maturation of SSU-rRNA	IEP	Enrichment
MF	GO:0030515	snoRNA binding	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Enrichment
BP	GO:0051189	prosthetic group metabolic process	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
BP	GO:1901657	glycosyl compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007319	SSU_processome_Utp21	689	938
IPR001680	WD40_repeat	184	220
IPR001680	WD40_repeat	582	612

External Links

No external refs found!

TP02G03700.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation