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  5. TP01G05320.1

TP01G05320.1


Description : RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].


Gene families : OG_01_0002043 (OrthoFinder) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G05320.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.55 tig00000615_g2585.t1 Cell cycle.mitosis and meiosis.chromatin... 0.07 OrthoFinder
Cre02.g086650 30785243, SMC2 Cell cycle.mitosis and meiosis.chromatin... 0.07 OrthoFinder
Cz10g09260.t1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.05 OrthoFinder
Dusal.0010s00009.1 33196797 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.05 OrthoFinder
EOD10000 No alias SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.07 OrthoFinder
OT_04G00570.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.05 OrthoFinder
PTI_22G01140.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.1 OrthoFinder
Sro864_g212600.1 Contig2395.g19632 Mitotic chromosome and X-chromosome-associated protein mix-1 0.13 OrthoFinder
Vocar.0004s0431.1 32890001 SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.03 OrthoFinder
XM_002504700.1 MICPUN_97912, 97912 Condensin complex component 0.05 OrthoFinder
XM_003064603.1 MicpuC2_43587, 43587 Condensin complex component 0.02 OrthoFinder
lcl|BLLF01000924.1_cds_GFH15948.1_10425 HaLaN_12279, GFH15948 SMC hinge domain-containing protein 0.01 OrthoFinder
lcl|BLLF01001625.1_cds_GFH20393.1_14870 HaLaN_17504, GFH20393 Structural maintenance of chromosomes protein 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61562.1_554 PRW61562 Structural maintenance of chromosomes 2-1 isoform B 0.05 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61563.1_555 PRW61563 Structural maintenance of chromosomes 2-1 isoform A 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497009.1_738 KAA8497009 Structural maintenance of chromosomes protein 2-1 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008156 negative regulation of DNA replication IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
BP GO:0016126 sterol biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Enrichment
BP GO:0048478 replication fork protection IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR010935 SMC_hinge 521 642
IPR003395 RecF/RecN/SMC_N 2 1164
No external refs found!