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  5. Sro983_g227810.1

Sro983_g227810.1 (Contig79.g820)


Aliases : Contig79.g820

Description : Sel1 domain protein repeat-containing protein


Gene families : OG_01_0000179 (OrthoFinder) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro983_g227810.1
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
Sro1011_g230970.1 Contig997.g10070 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro1011_g231050.1 Contig997.g10078 SAM and U-box domain-containing protein 1 0.03 OrthoFinder
Sro1154_g247120.1 Contig2345.g19268 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro1215_g253210.1 Contig2655.g21465 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro1227_g254310.1 Contig334.g4443 U-box domain-containing protein 0.01 OrthoFinder
Sro1311_g261780.1 Contig1682.g15105 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro1438_g272650.1 Contig3435.g26744 Sel1 domain protein repeat-containing protein 0.08 OrthoFinder
Sro1531_g280130.1 Contig2576.g20919 U box domain [Interproscan]. 0.02 OrthoFinder
Sro1588_g284330.1 Contig4233.g32103 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro195_g083320.1 Contig4576.g34169 Repeat-containing protein 0.04 OrthoFinder
Sro214_g088890.1 Contig282.g3674 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro227_g092440.1 Contig327.g4356 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro256_g100570.1 Contig3587.g27702 Hypothetical protein 0.01 OrthoFinder
Sro25_g017160.1 Contig1417.g13055 U box domain [Interproscan]. 0.02 OrthoFinder
Sro2646_g333570.1 Contig1915.g16542 Putative E3 ubiquitin-protein ligase LIN 0.01 OrthoFinder
Sro2646_g333590.1 Contig1915.g16544 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro361_g126480.1 Contig1094.g10573 SAM and U-box domain-containing protein 1 0.01 OrthoFinder
Sro3_g002900.1 Contig3832.g29475 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro4045_g352650.1 Contig2319.g19150 Hypothetical protein 0.01 OrthoFinder
Sro459_g147320.1 Contig4657.g34672 U box domain [Interproscan]. 0.03 OrthoFinder
Sro59_g034410.1 Contig571.g7287 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro639_g179810.1 Contig197.g2302 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro65_g036930.1 Contig155.g1763 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro792_g203190.1 Contig385.g5187 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro793_g203260.1 Contig534.g6934 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro793_g203310.1 Contig534.g6939 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro870_g213590.1 Contig1807.g15929 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro897_g217530.1 Contig4351.g32806 U box domain [Interproscan]. 0.01 OrthoFinder
Sro963_g225240.1 Contig3377.g26425 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder
Sro963_g225290.2 No alias U box domain; Sel1-like repeat [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 33 101
No external refs found!