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  5. Sro963_g225240.1

Sro963_g225240.1 (Contig3377.g26425)


Aliases : Contig3377.g26425

Description : Sel1 domain protein repeat-containing protein


Gene families : OG_01_0000179 (OrthoFinder) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro963_g225240.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Sro1215_g253210.1 Contig2655.g21465 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro1227_g254310.1 Contig334.g4443 U-box domain-containing protein 0.04 OrthoFinder
Sro1311_g261780.1 Contig1682.g15105 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro1438_g272650.1 Contig3435.g26744 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro1588_g284330.1 Contig4233.g32103 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro214_g088890.1 Contig282.g3674 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro256_g100570.1 Contig3587.g27702 Hypothetical protein 0.04 OrthoFinder
Sro25_g017160.1 Contig1417.g13055 U box domain [Interproscan]. 0.04 OrthoFinder
Sro2646_g333590.1 Contig1915.g16544 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro341_g121570.1 Contig3952.g30289 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro361_g126480.1 Contig1094.g10573 SAM and U-box domain-containing protein 1 0.04 OrthoFinder
Sro3_g002900.1 Contig3832.g29475 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro459_g147320.1 Contig4657.g34672 U box domain [Interproscan]. 0.03 OrthoFinder
Sro639_g179810.1 Contig197.g2302 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro65_g036920.1 Contig155.g1762 Hypothetical protein 0.04 OrthoFinder
Sro65_g036930.1 Contig155.g1763 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro792_g203190.1 Contig385.g5187 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro793_g203260.1 Contig534.g6934 Sel1 domain protein repeat-containing protein 0.07 OrthoFinder
Sro870_g213590.1 Contig1807.g15929 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro963_g225330.1 Contig3377.g26434 ERAD-associated E3 ubiquitin-protein ligase component 0.04 OrthoFinder
Sro983_g227810.1 Contig79.g820 Sel1 domain protein repeat-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
BP GO:0006665 sphingolipid metabolic process IEP Enrichment
BP GO:0006672 ceramide metabolic process IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR006597 Sel1-like 163 191
IPR006597 Sel1-like 194 223
IPR006597 Sel1-like 120 151
IPR003613 Ubox_domain 16 72
No external refs found!