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  5. Sro920_g220220.1

Sro920_g220220.1 (Contig2508.g20522)


Aliases : Contig2508.g20522

Description : Putative E3 ubiquitin-protein ligase LIN


Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro920_g220220.1
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
Cre12.g507200 30791912 No description available 0.01 OrthoFinder
Cre14.g612850 30776377 No description available 0.03 OrthoFinder
EOD29934 No alias U box domain [Interproscan]. 0.02 OrthoFinder
OT_09G00020.1 No alias U box domain [Interproscan]. 0.02 OrthoFinder
Sro121_g058770.1 Contig1619.g14631 U-box domain-containing protein 0.02 OrthoFinder
Sro1371_g267060.1 Contig1338.g12336 Putative E3 ubiquitin-protein ligase LIN 0.04 OrthoFinder
Sro1511_g278700.1 Contig2369.g19497 E3 ubiquitin-protein ligase 0.02 OrthoFinder
Sro15_g010940.1 Contig791.g8820 Putative E3 ubiquitin-protein ligase LIN 0.03 OrthoFinder
Sro179_g078560.1 Contig4117.g31448 Putative E3 ubiquitin-protein ligase LIN 0.03 OrthoFinder
Sro214_g088770.1 Contig282.g3662 Putative E3 ubiquitin-protein ligase LIN 0.04 OrthoFinder
Sro2403_g326410.1 Contig1134.g10895 U-box domain-containing protein 0.05 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58217.1_7785 PRW58217 U box domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 10 79
No external refs found!